LOCUS       AY305326                7714 bp    DNA     linear   INV 25-AUG-2006
DEFINITION  Perkinsus andrewsi 5S ribosomal RNA, small subunit ribosomal RNA
            genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene,
            internal transcribed spacer 2, and large subunit ribosomal RNA
            gene, complete sequence.
ACCESSION   AY305326
VERSION     AY305326.1  GI:37675413
KEYWORDS    .
SOURCE      Perkinsus chesapeaki
  ORGANISM  Perkinsus chesapeaki
            Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae;
            Perkinsus.
REFERENCE   1  (bases 1 to 7714)
  AUTHORS   Pecher,W.T., Robledo,J.A. and Vasta,G.R.
  TITLE     Identification of a second rRNA gene unit in the Perkinsus andrewsi
            genome
  JOURNAL   J. Eukaryot. Microbiol. 51 (2), 234-245 (2004)
   PUBMED   15134261
REFERENCE   2  (bases 1 to 7714)
  AUTHORS   Pecher,W.T., Robledo,J.A.F. and Vasta,G.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2003) Center of Marine Biotechnology, University
            of Maryland Biotechnology Institute, 701 E. Pratt St., Baltimore,
            MD 21202, USA
FEATURES             Location/Qualifiers
     source          1..7714
                     /organism="Perkinsus chesapeaki"
                     /mol_type="genomic DNA"
                     /strain="ATCC 50807"
                     /db_xref="ATCC:50807"
                     /db_xref="taxon:330153"
     misc_feature    1..7714
                     /note="ribosomal gene unit B"
     rRNA            1..121
                     /product="5S ribosomal RNA"
     misc_feature    122..1542
                     /note="intergenic spacer; IGS"
     rRNA            1543..3351
                     /product="small subunit ribosomal RNA"
     misc_RNA        3352..3539
                     /product="internal transcribed spacer 1"
     rRNA            3540..3698
                     /product="5.8S ribosomal RNA"
     misc_RNA        3699..4077
                     /product="internal transcribed spacer 2"
     rRNA            4078..7605
                     /product="large subunit ribosomal RNA"
     misc_feature    7606..7714
                     /note="intercluster spacer; ICS"
ORIGIN      
        1 gccagcggcc atactgcatc gaatacaccg gatcccatcc gaactccgaa gttaagcggt
       61 gcaaggcccg gatagtactg gggtggggga ccgcccggga agtccttagg gtgctgctgg
      121 ctttttcacg tgcccttttc acgaattcac agccccgcac cccatgtaca atgttgccca
      181 cccgaaatgc ctgcctgccc acccgaaatg cccgaaatgc ccgttagaaa aagtatgcga
      241 aaagttcttg tcaattttga cagtgtgtga aaaaactgaa aaagtccact caacattgca
      301 ttatgcaatt tgccactcaa cattgtccag ggggataggg ggtgaaaaag tatcgcagtc
      361 caactgaaaa gatgctaagt tgaaatgcgg cgcaaattca tcacttgagt tgcgaaaatc
      421 cctaaagtcg aatttggcac tcggtgacat gatcgggaat ttccctggtt acagtggtca
      481 aagtcccagc aattttggca aagtttttga gtttcgcact tttcgcagat ttcgtgtctg
      541 aaaaaaaaat ttcaactttg cgcaaagggg tcaaagggaa aaaaagyacc ctcaaaagga
      601 aatttccctt taatcccctt tgaagaaaat gcgcaaagtt aaatttgcga aaatttcgat
      661 tttctcatat gaccgattag ttggtgccag atggtagtcg ggatggttac acggtgcacg
      721 gaactcgttg gaagttctgg agttacgaat tggtcccgtc accacaattt gcgcattttt
      781 gaaattgcgc aaatttgcga aaaaagcagc gcgcaaagtt aaattgtgcg aaaattgact
      841 ttcaggtcgg tgcgcaaatt tggggtgaaa aagtggtgac agcatcagaa ttataataaa
      901 taatctataa tctagttctt ttattataat tagctgtcac caatcaccat ttgagatttt
      961 ttattttttt atgttttagt gaccgcggta ttttttccag agtactatcg tgatgtctga
     1021 gttgtctaaa acggcaattt cagaacatta ccagaaaaca ctgaatagtg gtttctgagt
     1081 ctgactgttt gaagtgtttt gggtattcgg cagctgccaa ttcggtcagc gtcgaatata
     1141 ctaacatttc tgtgtgtata tggtatctag cgatatcatt ggaatcatgg ggttttgtat
     1201 tagtacccgc tcattgtggg aaagtcgggt ggttcaatat cacctgcaaa tctaatacag
     1261 gatttgcatg atgcagcgac tgaccggggt tagtataata gctgattatt cggcttatta
     1321 tgcagaccta tcgtgttagt agttgcgact cttggcgtga accggaagac cggaacttga
     1381 tttcgactat ttacgtccgt aacacgtccg taaacaggag atttcaagaa tattgcacat
     1441 tttgtgtgat ataatcgtga tcatctgagc acgcttcgac tcttgaatat ttgttaaaca
     1501 accgatattc gggagctcgc aagcattgca attgatgcaa tcacctggtt gatcctgcca
     1561 gtagtcatat gcttgtctca aagattaagc catgcatgtc taagtataag ctttaaacgg
     1621 cgaaactgcg aatggctcat taaaacagtt atagtttatt tggtgatcga ttactatttg
     1681 gataaccgta gtaattctag agctaataca tgcgtcaagg cccgacttcg gaagggctgc
     1741 gtttattaga tacagaacca acctaggctc cgcctagtcc ttgttggtga ttcataataa
     1801 cccggcgaat cgcacggctt gtccggcgat ggaccattca agtttctgac ctatcagcta
     1861 tggacggtag ggtattggcc taccgtggcg ttgacgggta acggggaatt agggttcgat
     1921 tccggagagg gagcctgaga aacggctacc acatctaagg aaggcagcag gcgcgcaaat
     1981 tacccaatcc tgatacaggg aggtagtgac aagaaataac aatacagggc aattctgtct
     2041 tgtaattgga atgagtagat tttaaatctc tttacgagta tcaattggag ggcaagtctg
     2101 gtgccagcag ccgcggtaat tccagctcca atagcgtata ttaaagttgt tgcggttaaa
     2161 aagctcgtag ttggatttct gccttgggcg accggtccac ctttcctacg ggttaggttg
     2221 gtaccaggtt tgaccttggc tttttcttgg gattcgtgct cacgcactta actgtgcgct
     2281 gaccgtgttc caagactttt actttgagga aattagagtg tttcaagcag gcttatgccg
     2341 tgaatacatt agcatggaat aataggatat gactttggtc atattttgtt ggtttctagg
     2401 actgaagtaa tgattaatag ggacagtcgg gggcattcgt atttaactgt cagaggtgaa
     2461 attcttggat ttgttaaaga cgaactactg cgaaagcatt tgccaaggat gttttcattg
     2521 atcaagaacg aaagttaggg gatcgaagac gatcagatac cgtcctagtc ttaaccataa
     2581 actatgccga ctagggattg ggagtcgtta attttagacg ctctcagcac ctcgtgagaa
     2641 atcaaagtct ttgggttccg gggggagtat ggtcgcaagg ctgaaactta aaggaattga
     2701 cggaagggca ccaccaggag tggagcctgc ggcttaattt gattcaacac gggaaaactc
     2761 accaggtcca gacataggaa ggattgacag attgatagct ctttcttgat tctatgggtg
     2821 gtggtgcatg gccgttctta gttggtggag tgatttgtct ggttaattcc gttaacgaac
     2881 gagaccttaa cctgctaaat agttgcgtga aatcttgtat ttcaccgcta cttcttagag
     2941 ggactttgtg tgtttaacac aaggaagctt gaggcaataa caggtctgtg atgcccttag
     3001 atgttctggg ctgcacgcgc gctacactga cacgatcaac gagtatttcc ttgcccggta
     3061 gggttagggt aatcttttga aatcgtgtcg tgctagggat agacgattgc aattattcgt
     3121 cttcaacgag gaattcctag taaatgcaag tcatcagctt gcgttgatta cgtccctgcc
     3181 ctttgtacac accgcccgtc gctcctaccg attgagtgat ccggtgagct gtccggactg
     3241 cgattagttc agtttctgtt cttttcgcgg gaagttctgc aaaccttatc acttagagga
     3301 aggagaagtc gtaacaaggt ttccgtaggt gaacctgcag aaggatcatt cacaccgatt
     3361 cattctctga gaaaccagcg gtctcttctt cggaagagat gggatctccg ctttgtttag
     3421 atccccacac ctgaccgctt taaccggctg ggtaggtgca taacttctat gaaccatatt
     3481 gtactagtct aaagtatcca atatcctttt ggattttggt atttcaaaac gaaattccaa
     3541 actctcaacg atggatgcct cggctcgaga atcgatgaag gacgcagcga agtgcgataa
     3601 gcactgcgat ttgcagaatt ccgtgaacca gtagaaatct caacgcatac tgcacaaagg
     3661 ggatttatcc tctttgtaca tacatatcag tgtcgctctt cttcccgata caaacatttt
     3721 gttggttttt aatcaactct atgctttgta tcccgcttga attccgattt attggaattc
     3781 gctgtgtgcg cttgctaaca caggcgcatt aatttgcaag gctataatac tactttaagt
     3841 agtactgtag ccccttcgca agaaggactg cgctagtgag tatctttgga tactcgcgaa
     3901 ctcgactgtg ttgtggttga ttccgtgttc cttgatcacg tgattcatcg cttcaacgca
     3961 ttatgtcaat cttgatgaat gcagagaagt tgtttatgag tctcgcggtc gctttggtct
     4021 cagaatcgtt actataacac gcttgtcggt ttgcaccatt ggcgatatgt catcattaga
     4081 aggcctgatg tgtgtgagat tacccgctga atttaagcat ataagtaagc ggaggaaaag
     4141 aaactaacta ggattccctt agtaatggcg aatgaacagg gatcagctca gtgcctaatc
     4201 agaatcactt gtggttctga aatgtggctt gaaggcagwa ccagtggcaa cgcggacgaa
     4261 agtctcttgg aaaagagcgt catagagggt gagaatcccg tgagtcgttt gcagtttgcc
     4321 acgtacggtc tgtgttctaa cgagtcgcgt tccttgggat tggagcgtaa acgggtggta
     4381 aatttcatcc aaagcaaaat atatactcga gaccgatagc acaaaagtac cgtgagggaa
     4441 aggtgaaaag aactttgaga agagggttaa atagtgcctg aaatcgttga gaaggaagcg
     4501 gatgccgccg ttgcatatgc tgattgtagg attgctgcat gcttgtgtct tctgctactt
     4561 atacacagac ctagtcgtgt tgagcagttg tttggcacta gtgcgtggtg tttcctgctt
     4621 tcagccgtca gcatcattgg ctgagcggaa ataatccttg gatgctaatt ggttcgctat
     4681 gcgaattggt tgcttccttg cgatactcgc tgctcggtca atgaggaagt gcgtttgctg
     4741 gtcaacgagc tttctaactg tcattaccct gcgcttttcg attcgtcgag tggccaggat
     4801 gtggctttga gattgttcgc acttagtaat cgcgatgctg gcttccaacg gttgcctccg
     4861 gcccgtcttg aaacacggac caaggagtct aacgtatgtg cgagtgtgtg agtggcaaac
     4921 ttatacgcgt aatgaaagtg aggccgtatg gccatgttgg ggtctccaac aaccgacctt
     4981 gatcttcggt gaaaggtttg agtatgagca tatccgttag gacccgaaag atggtgaact
     5041 atgcctgagc agggtgaagc caggggaaac tctggtggag gctcgtagcg atactgacgt
     5101 gcaaatcgtt cgtcagactt gggtataggg gcgaaagact aatcgaacca tctagtagct
     5161 ggttccctcc gaagtttccc tcaggatagc tagaatcttt atcagttttg tcaggtaaag
     5221 cgaatgatta gaggttccgg ggaagtaact tcctcgacct attctcaaac tttaaatggg
     5281 caagatccag tagttactta attgaactat tggggtcaat gagacgactc taagtgggcc
     5341 atttttggta agcagaactg gcgatgaggg atgaacctaa cgctcggtta aggtgctwaa
     5401 ctgctcgctc atcagatacc acaaagggtg ttggtcgatc ttaacagcag gacggtggtc
     5461 atggaagtcg aaatccgcta aggagtgtgt aacaactcac ctgccgaatc gactagcccc
     5521 gaaaatggat agcgctgaag cgagtgaccg atacygggcc attgttgcaa gataattggc
     5581 aacaatgagt aggagggcgt gggggttgtg aagaagcttg gacgtgagtc cgagtgaaac
     5641 agcttccagt gcagatcttg gtggtagtag caagtattca ataagagaac attgaaggcc
     5701 gaagtgggga agggttccat gtgaacagca cttggacatg ggttagccga tcctgagaga
     5761 caggttaaat tccattggat tggagctttg gctctgtttc tcgaaaggga agctggttag
     5821 tattccagcg ccgagacgtg gataatatgt ggcaacacaa gtgaactcgg acacgccata
     5881 ggggacccca ggaagcgttg tcttttcttt tgaacagttt gacttaccct ggaatcagat
     5941 catctggaga tagggttttc aaactggaat agcaccttgt ctaacagggt gtctggagtg
     6001 ttctcgctgg cccttgaaaa tccgagggat agatttattc gcactctcga tcgtacccat
     6061 aaccgcatca ggtctccaag gttagaagcc tctggtccgt aggacaaagt agataaggga
     6121 agtcggcaaa ataggtccgt aacttcggga aaaggactgg ctctgaggtt tggtatgtgg
     6181 aacctggatt aattgttgga gtcgagcaga gactacttgt tgctcacgtg acttgtggac
     6241 tccttgcttg gtaccttcaa ttggttcagg ctgcttcggc gctccgcatg cacttaacaa
     6301 acagctcaga actggagcgg acaaggggaa tccgactgtt taatcaaaac aaagcattgt
     6361 gatggcctca aaaggtgttg acacaatgtg atttctgccc agtgctctga atgtcaaagt
     6421 gatgaaattc aaacaagcgc gggtaaacgg cgggagtaac tatgactctc ttaaggtagc
     6481 caaatgcctc gtcatctaac tagtgacgcg catgaatgga ttaacgagat tcccactgtc
     6541 cctatctact gtctagcgaa accacagcca agggaacggg cttggaatag tcagcgggga
     6601 aagaagaccc tgttgagctt gactctagtc tgagattgtg aaacgactta tgaggtgtag
     6661 cataagtggg agctccggcg cacgtgaaat accactactc gtaatgttgt tttacttatt
     6721 ctattaagcg gaagcttgcg ctcttcgagt agcaagtttt ggatttacag ttggtgcttg
     6781 caccgaccta tccgtgtaga tgacattctc aggtggggag tttggctggg gcggcacatc
     6841 tgttaaatga taacgcaggt gtcctaaggt gagctcagtg agaacagaaa tctcacgtag
     6901 accaaaaggg gaaaagctcg cttgattttg gttttcagta cgaacacaaa ctgcgaaagc
     6961 atggcctatc gatcctttag gtctgtgaag tatacagcta gaggtgtcag aaaagttacc
     7021 acagggataa ctggcttgtg gcagccaagc gttcatagcg acgttgcttt ttgatccttc
     7081 gatgtcggct cttcctatca ttgagacgca gaagtctcaa agtgtcggat tgttcacccg
     7141 ccaataggga acgtgagctg ggtttagacc gtcgtgagac aggttagttt taccctactg
     7201 acaaagtaga tactgcgaca gtagtcgaag ttagtacgag aggaacactt cgtccagata
     7261 cttggttaat gccgttgtct gaaaagacag tacggcgaag ctaccatctg ctggattacg
     7321 gctgaacgcc tctaagccgg aatccatgct ggataagcag tgttgtacac cgtgctcaat
     7381 gctacaagaa aaaggctagg ttaaatttcg gtttaaccaa aattcaagct gctttacctc
     7441 tagttgcatt gacttgtgat tagagtgtaa ggtattcata gcaattgcaa gtattgggct
     7501 cgataaatcc tttgaagacg acttaattgc atccgggtat tgtaagtgtt gagagtaggc
     7561 ttagtcttac gatccactga gattcatccc gtgttgcgcc gatttgtctc tctgtcctat
     7621 ttgcggttac ggacgctacg tgtagattga gatttcgcac aagtcgctgt tttcgggttg
     7681 gtgatgatgt tgctatttag tgcattgaat gatt
//
