Implementing a Numerical Package to Model Collective Cell Migration

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Stonko_Technical_Report.pdf (1.51 MB)

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https://userpages.umbc.edu/~gobbert/papers/Stonko_Technical_Report.pdf

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http://hdl.handle.net/11603/11534

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UMBC Biological Sciences Department
UMBC Faculty Collection

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2014-01-27

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Technical Report
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Subjects

Dimensional
Implementation constraints
Wound healing
Embryonic development
Pathological development
Drosophila melanogaster
Matlab
Numerical Challenges and Implementation
UMBC High Performance Computing Facility (HPCF)

Abstract

In this article we present our three dimensional mathematical model of collective cell migration and describe the method by which we developed and implemented this package on the High Performance Computing Facility at UMBC. Specifically, we describe our motivation and the results of a new interface to define initial conditions for the three dimensional system, specify implementation constraints and solutions for the HPCF regarding post-processing, and outline several implementation changes that we made in order to achieve improved computation time.