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    • Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms 

      Speiser, Daniel I.; Pankey, M. Sabrina; Zaharoff, Alexander K.; Battelle, Barbara A.; Bracken-Grissom, Heather D.; Breinholt, Jesse W.; Bybee, Seth M.; Cronin, Thomas W.; Garm, Anders; Lindgren, Annie R.; Patel, Nipam H.; Porter, Megan L.; Protas, Meredith E.; Rivera, Ajna S.; Serb, Jeanne M.; Zigler, Kirk S.; Crandall, Keith A.; Oakley, Todd H. (BioMed Central Ltd, 2014-11-19)
      Background: Tools for high throughput sequencing and de novo assembly make the analysis of transcriptomes (i.e. the suite of genes expressed in a tissue) feasible for almost any organism. Yet a challenge for biologists ...