Browsing by Subject "mathematical models"
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Item Single-footprint retrievals for AIRS using a fast TwoSlab cloud-representation model and the SARTA all-sky infrared radiative transfer algorithm(Copernicus GmbH, 2018) DeSouza-Machado, Sergio; Strow, L. Larrabee; Tangborn, Andrew; Huang, Xianglei; Chen, Xiuhong; Liu, Xu; Wu, Wan; Yang, QiguangOne-dimensional variational retrievals of temperature and moisture fields from hyperspectral infrared (IR) satellite sounders use cloud-cleared radiances (CCRs) as their observation. These derived observations allow the use of clear-sky-only radiative transfer in the inversion for geophysical variables but at reduced spatial resolution compared to the native sounder observations. Cloud clearing can introduce various errors, although scenes with large errors can be identified and ignored. Information content studies show that, when using multilayer cloud liquid and ice profiles in infrared hyperspectral radiative transfer codes, there are typically only 2–4 degrees of freedom (DOFs) of cloud signal. This implies a simplified cloud representation is sufficient for some applications which need accurate radiative transfer. Here we describe a single-footprint retrieval approach for clear and cloudy conditions, which uses the thermodynamic and cloud fields from numerical weather prediction (NWP) models as a first guess, together with a simple cloud-representation model coupled to a fast scattering radiative transfer algorithm (RTA). The NWP model thermodynamic and cloud profiles are first co-located to the observations, after which the N-level cloud profiles are converted to two slab clouds (TwoSlab; typically one for ice and one for water clouds). From these, one run of our fast cloud-representation model allows an improvement of the a priori cloud state by comparing the observed and model-simulated radiances in the thermal window channels. The retrieval yield is over 90 %, while the degrees of freedom correlate with the observed window channel brightness temperature (BT) which itself depends on the cloud optical depth. The cloud-representation and scattering package is benchmarked against radiances computed using a maximum random overlap (RMO) cloud scheme. All-sky infrared radiances measured by NASA's Atmospheric Infrared Sounder (AIRS) and NWP thermodynamic and cloud profiles from the European Centre for Medium-Range Weather Forecasts (ECMWF) forecast model are used in this paper.Item Spontaneous Calcium Release in Cardiac Myocytes: Store Overload and Electrical Dynamics(Illinois State University, 2015) Alexander, Amanda M.; DeNardo, Erin K.; Frazier III, Eric; McCauley, Michael; Rojina, Nicholas; Coulibaly, Zana; Peercy, Bradford E.; Izu, Leighton T.Heart disease is the leading cause of mortality in the United States. One cause of heart arrhythmia is calcium (Ca²⁺) mishandling in cardiac muscle cells. We adapt Izu's et al. mathematical reaction-diffusion model of calcium in cardiac muscle cells, or cardiomyocytes, [14], implemented by Gobbert [12], and analyzed in Coulibaly et al. [8] to include calcium being released from the sarcoplasmic reticulum (SR), the effects of buffers in the SR, particularly calsequestrin, and the effects of Ca²⁺ influx due to voltage across the cell membrane. Based on simulations of the model implemented in parallel using MPI, our findings aligned with known biological models and principles, giving us a thorough understanding of several factors that influence Ca²⁺ dynamics in cardiac myocytes. Speci cally, dynamic calcium store will cap previous calcium blow-up seen in the model. Calcium channels located in spatial opposition of calcium release units produce more predictable intracellular calcium propagation. And we used multi-parametric calcium dynamics tables, which act as a multidimensional bifurcation diagram, to visualize parameter boundaries between different biophysical dynamics.