UMBC College of Engineering and Information Technology Dean's Office

Permanent URI for this collection


Recent Submissions

Now showing 1 - 20 of 31
  • Item
    Audio deepfakes: A survey
    (Frontiers, 2023-01-09) Khanjani, Zahra; Watson, Gabrielle; Janeja, Vandana
    A deepfake is content or material that is synthetically generated or manipulated using artificial intelligence (AI) methods, to be passed off as real and can include audio, video, image, and text synthesis. The key difference between manual editing and deepfakes is that deepfakes are AI generated or AI manipulated and closely resemble authentic artifacts. In some cases, deepfakes can be fabricated using AI-generated content in its entirety. Deepfakes have started to have a major impact on society with more generation mechanisms emerging everyday. This article makes a contribution in understanding the landscape of deepfakes, and their detection and generation methods. We evaluate various categories of deepfakes especially in audio. The purpose of this survey is to provide readers with a deeper understanding of (1) different deepfake categories; (2) how they could be created and detected; (3) more specifically, how audio deepfakes are created and detected in more detail, which is the main focus of this paper. We found that generative adversarial networks (GANs), convolutional neural networks (CNNs), and deep neural networks (DNNs) are common ways of creating and detecting deepfakes. In our evaluation of over 150 methods, we found that the majority of the focus is on video deepfakes, and, in particular, the generation of video deepfakes. We found that for text deepfakes, there are more generation methods but very few robust methods for detection, including fake news detection, which has become a controversial area of research because of the potential heavy overlaps with human generation of fake content. Our study reveals a clear need to research audio deepfakes and particularly detection of audio deepfakes. This survey has been conducted with a different perspective, compared to existing survey papers that mostly focus on just video and image deepfakes. This survey mainly focuses on audio deepfakes that are overlooked in most of the existing surveys. This article's most important contribution is to critically analyze and provide a unique source of audio deepfake research, mostly ranging from 2016 to 2021. To the best of our knowledge, this is the first survey focusing on audio deepfakes generation and detection in English.
  • Item
    TSSA: Two-Step Semi-Supervised Annotation for Radargrams on the Greenland Ice Sheet
    (IEEE, 2023-10-20) Jebeli, Atefeh; Tama, Bayu Adhi; Janeja, Vandana; Holschuh, Nicholas; Jensen, Claire; Morlighem, Mathieu; MacGregor, Joseph A.; Fahnestock, Mark A.
    Ice-penetrating radar surveys have been conducted across the Greenland Ice Sheet since the 1960s, producing radargrams that measure ice thickness and detect the ice sheet’s radiostratigraphy. However, these radargrams are relatively under-explored and not yet fully annotated, mapped, or interpreted glaciologically. We aim to move towards automatic radargram annotation using deep learning-based methods. To provide a training set for these methods, we develop a two-step semi-supervised annotation (TSSA) approach that uses an existing unsupervised layer annotation (ARESELP) method and a deep learning-based segmentation approach (U-Net) to detect surface, and bottom reflectors (representing the bedrock) layers in radargrams. Here we focus on two evaluations of our approach: 1. Surface and bottom annotations; and 2. Data augmentation and transfer learning techniques for improving the performance of deep learning methods. Our study is a foundation for improving the efficacy of AI-based methods for auto-annotation of radargrams, where the training set is generated seamlessly through unsupervised learning.
  • Item
    Multi-domain Anomalous Relationships in Heterogeneous Temporal Data
    (2023-12-06) Ale, Tolulope; Janeja, Vandana
    The Arctic region is crucial to global climate stability. However, recent years have witnessed periods of extreme snow and ice melt, with rising temperatures that double the global average. These are not isolated events. They are the result of intricate interconnections across distinct domains. The challenge, therefore, lies not in understanding these individual domains, such as temperature, and radiation, but in decoding the inter-domain relationships inducing these polar anomalies. To address this, our study presents a novel framework aimed at mining these inter-domain relationships to explain such anomalies and the relationship across time series features comprehensively. These features may be selected from the same or different domains. Such anomalous relationships across features could help detect interesting phenomena such as extreme snow melt, and cloud cover and help identify time periods of interest when such relationships are more prevalent. We extracted the anomalous intervals in each domain using the Poisson Distribution model of rSatScan, then leveraged the concept of Direct Overlap and Proximity of anomalies to identify the direct and time-delayed temporal association (delayed correlation) between anomalies across features. The concept helps us understand how events in one domain may be associated with events in another domain during specific time periods using association rule mining. We evaluated our approach using ERA5 reanalysis data, and validated the identified anomalies against ground truth and evaluated the strength of the generated association rules using metrics like confidence and lift. Notably, several of our identified rules were consistent with findings confirmed by domain experts.
  • Item
    Discovering Portable Options through Automated Mapping
    Topin, Nicholay; Haltmeyer, Nicholas; Squire, Shawn; Winder, John; MacGlashan, James; desJardins, Marie
    Goal for artificial agents: Learn the most efficient process for completing a task in a given domain o Corollary: Reuse and transfer learned knowledge o Previous work assumed that a mapping was provided or that all domains were identical o Our contributions:  Automatically map across domains with different objects and attributes  Leverage prior knowledge by identifying commonalities between source and target domains  Provide novel techniques for scoring mappings and abstracting domains o Our method outperforms Pickett and Barto's PolicyBlocks (2002) and MacGlashan's Transfer Options (2013)
  • Item
    Game Changers
    (UMBC Magazine, 2021-12-08) Lamb, Kennedy
  • Item
    Nanocapsules with HIF-1-alpha Inhibitor for Treatment of Choroidal Neovascularization in a Rat Model
    (ARVO, 2023-06) Han, Ian; Pandala, Narendra; Maisha, Nuzhat; Ale, Tolulope; Mullins, Robert; Lavik, Erin B.; Tucker, Budd A.
    Purpose : Choroidal neovascularization (CNV) is a vision-threatening complication of many retinal diseases, including age-related macular degeneration. Currently, the mainstay of CNV treatment is intravitreal delivery of antibodies that bind VEGF. However, there remains a great need for alternative therapies with longer duration and better treatment effect. This study describes the development of nanocapsule-based formulations toward sustained drug delivery of acriflavine (anti-angiogenic agent that inhibits hypoxia inducible factor [HIF]-1-alpha) and assesses its impact on CNV formation in a rat model. Methods : Polyurethane nanocapsules were synthesized by an interfacial condensation polymerization reaction in a nanoemulsion. Acriflavine was mixed with isophorone diisocyanate in water and then applied in drop-wise fashion to the solution before lyophilization to form drug capsules. Wild type Brown Norway rats were treated with laser photocoagulation to induce CNV. Eyes were injected intravitreally on the same day with 10 ul of either acriflavine nanocapsules (5 ug total dose of acriflavine) or blank nanocapsules as controls. Animals were assessed at 14-days post-injection with fundus photography, fluorescein angiography, and OCT (Figure). Eyes were enucleated for immunohistochemical analysis. CNV formation was compared between eyes treated with acriflavine versus blank nanocapsules. Results : Synthesis of acriflavine nanocapsules was reliable (Z-average diameter 197+/-39 nm) with a drug loading efficiency of 41 ug acriflavine/mg of nanocapsules. Following intravitreal injection, both nanocapsule formulations were well-tolerated, without signs of clinical inflammation or retinal toxicity. Visible intravitreal aggregates of nanocapsules were seen at 14-days post-injection. Preliminary qualitative analysis demonstrated markedly decreased sizes of CNV in acriflavine nanocapsules relative to fellow eye controls treated with blank nanocapsules (Figure). Conclusions : Nanocapsule formulations with acriflavine can be reliably manufactured with consistent drug dosing. Acriflavine nanocapsules are well-tolerated after intravitreal injection in an in vivo rat model and shows promise for inhibiting CNV formation. Studies are ongoing to quantify the effect of CNV inhibition at different dosages as well as various time points to evaluate drug duration.
  • Item
    Unaffected ex vivo clotting cascade by experimental hemostatic nanoparticles when introduced in the presence of recombinant tissue plasminogen activator
    (Wolters Kluwer Health, 2022-12-06) Beyer, Margaret; France, John; Nagaraja, Tavarekere N; Lavik, Erin; Knight, Robert A; Lewandowski, Christopher A; Miller, Joseph B
    CONTEXT: Hemostatic nanoparticles (hNPs) have shown efficacy in decreasing intracerebral hemorrhage (ICH) in animal models and are suggested to be of use to counter tissue plasminogen activator (tPA)-induced acute ICH. AIMS: The objective of this study was to test the ability of an hNP preparation to alter the clotting properties of blood exposed to tPA ex vivo. MATERIALS AND METHODS: Fresh blood samples were obtained from normal male Sprague-Dawley rats (~300 g; n = 6) and prepared for coagulation assays by thromboelastography (TEG) methods. Samples were untreated, exposed to tPA, or exposed to tPA and then to hNP. TEG parameters included reaction time (R, time in minutes elapsed from test initiation to initial fibrin formation), coagulation time (K, time in minutes from R until initial clot formation), angle (α, a measure in degrees of the rate of clot formation), maximum amplitude (MA, the point when the clot reaches its MA in mm), lysis at 30 min after MA (LY30, %), and clot strength (G, dynes/cm²), an index of clot strength. STATISTICAL ANALYSIS USED: Kruskal–Wallis test was employed to compare TEG parameters measured for untreated control samples versus those exposed to tPA and to compare tPA-exposed samples to samples treated with tPA + hNPs. Significances were inferred at P ≤ 0.05. RESULTS: Compared to untreated samples, tPA-treated samples showed a trend toward decreased angle and G suggesting potentially clot formation rate and clot strength. The addition of hNP did not affect any of these or other measured indices. CONCLUSIONS: The data demonstrated no hemostatic effects when the hNP was used in the presence of tPA. The lack of change in any of the TEG parameters measured in the present study may indicate limitations of the hNPs to reverse the thrombolytic cascade initiated by tPA.
  • Item
    Biocompatible Nanocapsules for Self-Healing Dental Resins and Bone Cements
    (ACS, 2022-08-31) Menikheim, Sydney; Leckron, Joshua; Duffy, Michael; Zupan, Marc; Mallory, Amber; Lien, Wen; Lavik, Erin
    Bone cements and dental resins are methacrylatebased materials that have been in use for many years, but their failure rates are quite high with essentially all dental resins failing within 10 years and 25% of all prosthetic implants will undergo aseptic loosening. There are significant healthcare costs and impacts on quality of life of patients. Self-healing bone cements and resins could improve the lifespan of these systems, reduce costs, and improve patient outcomes, but they have been limited by efficacy and toxicity of the components. To address these issues, we developed a self-healing system based on a dual nanocapsule system. Two nanocapsules were synthesized, one containing an initiator and one encapsulating a monomer, both in polyurethane shells. The monomer used was triethylene glycol dimethacrylate. The initiator capsules synthesized contained benzoyl peroxide and butylated hydroxytoluene. Resins containing the nanocapsules were tested in tension until failure, and the fractured surfaces were placed together. 33% of the samples showed self-healing behaviors to the point where they could be reloaded and tested in tension. Furthermore, the capsules and their components showed good biocompatibility with Caco-2 cells, a human epithelial cell line suggesting that they would be well tolerated in vivo.
  • Item
    PEGylated Polyester Nanoparticles Trigger Adverse Events in a Large Animal Model of Trauma and in Naıvë Animals: Understanding Cytokine and Cellular Correlations with These Events
    (ACS, 2022-07-13) Maisha, Nuzhat; Kulkarni, Chhaya; Pandala, Narendra; Zilberberg, Rose; Schaub, Leasha; Neidert, Leslie; Glaser, Jacob; Cannon, Jeremy; Janeja, Vandana; Lavik, Erin
    Intravenously infusible nanoparticles to control bleeding have shown promise in rodents, but translation into preclinical models has been challenging as many of these nanoparticle approaches have resulted in infusion responses and adverse outcomes in large animal trauma models. We developed a hemostatic nanoparticle technology that was screened to avoid one component of the infusion response: complement activation. We administered these hemostatic nanoparticles, control nanoparticles, or saline volume controls in a porcine polytrauma model. While the hemostatic nanoparticles promoted clotting as marked by a decrease in prothrombin time and both the hemostatic nanoparticles and controls did not active complement, in a subset of the animals, hard thrombi were found in uninjured tissues in both the hemostatic and control nanoparticle groups. Using data science methods that allow one to work across heterogeneous data sets, we found that the presence of these thrombi correlated with changes in IL-6, INF-alpha, lymphocytes, and neutrophils. While these findings might suggest that this formulation would not be a safe one for translation for trauma, they provide guidance for developing screening tools to make nanoparticle formulations in the complex milieux of trauma as well as for therapeutic interventions more broadly. This is important as we look to translate intravenously administered nanoparticle formulations for therapies, particularly considering the vascular changes seen in a subset of patients following COVID-19. We need to understand adverse events like thrombi more completely and screen for these events early to make nanomaterials as safe and effective as possible.
  • Item
    Azithromycin Protects Retinal Glia Against Oxidative Stress-Induced Morphological Changes, Inflammation, and Cell Death
    (ACS, 2022-07-12) Mahaling, Binapani; Pandala, Narendra; Wang, Heuy-Ching; Lavik, Erin
    The reactivity of retinal glia in response to oxidative stress has a significant effect on retinal pathobiology. The reactive glia change their morphology and secret cytokines and neurotoxic factors in response to oxidative stress associated with retinal neurovascular degeneration. Therefore, pharmacological intervention to protect glial health against oxidative stress is crucial for maintaining homeostasis and the normal function of the retina. In this study, we explored the effect of azithromycin, a macrolide antibiotic with antioxidant, immunomodulatory, anti-inflammatory, and neuroprotective properties against oxidative stress-induced morphological changes, inflammation, and cell death in retinal microglia and Müller glia. Oxidative stress was induced by H2O2, and the intracellular oxidative stress was measured by DCFDA and DHE staining. The change in morphological characteristics such as the surface area, perimeter, and circularity was calculated using ImageJ software. Inflammation was measured by enzyme-linked immunosorbent assays for TNF-α, IL-1β, and IL-6. Reactive gliosis was characterized by anti-GFAP immunostaining. Cell death was measured by MTT assay, acridine orange/propidium iodide, and trypan blue staining. Pretreatment of azithromycin inhibits H2O2-induced oxidative stress in microglial (BV-2) and Müller glial (MIO-M1) cells. We observed that azithromycin inhibits oxidative stress-induced morphological changes, including the cell surface area, circularity, and perimeter in BV-2 and MIO-M1 cells. It also inhibits inflammation and cell death in both the glial cells. Azithromycin could be used as a pharmacological intervention on maintaining retinal glial health during oxidative stress.
  • Item
    Hydroporphyrin-Doped Near-Infrared-Emitting Polymer Dots for Cellular Fluorescence Imaging
    (ACS, 2022-04-22) Riahin, Connor; Meares, Adam; Esemoto, Nopondo Ndoh; Ptaszek, Marcin; LaScola, Michael; Pandala, Narendra; Lavik, Erin; Yang, Mengran; Stacey, Gary; Hu, Dehong; Traeger, Jeremiah C.; Orr, Galya; Rosenzweig, Zeev
    Near-infrared (NIR) fluorescent semiconductor polymer dots (Pdots) have shown great potential for fluorescence imaging due to their exceptional chemical and photophysical properties. This paper describes the synthesis of NIR-emitting Pdots with great control and tunability of emission peak wavelength. The Pdots were prepared by doping poly[(9,9-dioctylfluorenyl-2,7-diyl)-alt-co-(1,4-benzo-(2,1′,3)-thiadiazole)] (PFBT), a semiconducting polymer commonly used as a host polymer in luminescent Pdots, with a series of chlorins and bacteriochlorins with varying functional groups. Chlorins and bacteriochlorins are ideal dopants due to their high hydrophobicity, which precludes their use as molecular probes in aqueous biological media but on the other hand prevents their leakage when doped into Pdots. Additionally, chlorins and bacteriochlorins have narrow deep red to NIR-emission bands and the wide array of synthetic modifications available for modifying their molecular structure enables tuning their emission predictably and systematically. Transmission electron microscopy (TEM) and dynamic light scattering (DLS) measurements show the chlorin- and bacteriochlorin-doped Pdots to be nearly spherical with an average diameter of 46 ± 12 nm. Efficient energy transfer between PFBT and the doped chlorins or bacteriochlorins decreases the PFBT donor emission to near baseline level and increases the emission of the doped dyes that serve as acceptors. The chlorin- and bacteriochlorin-doped Pdots show narrow emission bands ranging from 640 to 820 nm depending on the doped dye. The paper demonstrates the utility of the systematic chlorin and bacteriochlorin synthesis approach by preparing Pdots of varying emission peak wavelength, utilizing them to visualize multiple targets using wide-field fluorescence microscopy, binding them to secondary antibodies, and determining the binding of secondary antibody-conjugated Pdots to primary antibody-labeled receptors in plant cells. Additionally, the chlorin- and bacteriochlorin-doped Pdots show a blinking behavior that could enable their use in super-resolution imaging methods like STORM.
  • Item
    Highlighting the Usage of Polymeric Nanoparticles for the Treatment of Traumatic Brain Injury: A Review Study
    (Elsevier, 2021-07) Onyeje, Chiad; Lavik, Erin
    There are very limited options for treating traumatic brain injury (TBI). Nanoparticles offer the potential of targeting specific cell types, and, potentially, crossing the BBB under the right conditions making them an area of active research for treating TBI. This review focuses on polymeric nanoparticles and the impact of their chemistry, size, and surface groups on their interactions with the vasculature and cells of the brain following injury. The vast majority of the work in the field focuses on acute injury, and when the work is looked at closely, it suggests that nanoparticles rely on interactions with vascular and immune cells to alter the environment of the brain. Nonetheless, there are promising results from a number of approaches that lead to behavioral improvements coupled with neuroprotection that offer promise for therapeutic outcomes. The majority of approaches have been tested immediately following injury. It is not entirely clear what impact these approaches will have in chronic TBI, but being able to modulate inflammation specifically may have a role both during and after the acute phase of injury.
  • Item
    Storytelling for social justice and engagement: a materials science class
    (ACS, 2021-09-08) Posey, Julianna; Lavik, Erin
    The biographical stories of scientists and engineers, particularly those from historically excluded groups, have been integrated into the curriculum for a materials science course. The goal is to help students connect and relate to the scientific content, while opening the door to conversations about social justice in the virtual classroom. We have covered scientists including James Parsons, Hiroshi Amano, Evelyn Roberts, Wallace Carothers, Walter Hardenberg, and Max Liboiron. Furthermore, the technical information covered in the course has been contextualized by facilitating discussions on the history of certain raw material extraction and its ties to racism, colonialism, and the atrocities that result from these practices. This course was tailored to operate in an online setting by telling the stories of these scientists during lecture, and then asking students to express their learning through informal discussions and written reflections. This methodology encouraged conversations about inclusion and the role scientists must play as they consider both their work and the world around them, and students reported higher engagement and understanding between the technical science and the stories.
  • Item
    Engineering PEGylated polyester nanoparticles to reduce complement-mediated infusion reaction
    (ACS, 2021-09-09) Maisha, Nuzhat; Naik, Nidhi; Okesola, Mawuyon; Coombs, Tobias; Zilberberg, Rose; Pandala, Narendra; Lavik, Erin
    Translation of intravenously administered nanomaterials to the clinic is limited due to adverse infusion reactions. While these reactions are infrequent, with up to 10% prone to experiencing infusion reactions, the reactions can be severe and life-threatening. One of the innate immune pathways, the complement activation pathway, plays a significant role in mediating this response. Nanoparticle surface properties are a relevant design feature, as they control the blood proteins the nanoparticles interact with and allow the nanoparticles to evade the immune reaction. PEGylation of nanosurfaces is critical in improving the blood circulation of nanoparticles and reducing opsonization. Our goal was to understand whether modifying the surface architecture by varying the PEG density and architecture can impact the complement response in vitro. We utilized block copolymers of poly(lactic acid)-b-poly(ethylene glycol) prepared with poly(ethylene glycol) macroinitiators of molecular weights 3400 and 5000 Da. Tracking the complement biomarker C5a, we monitored the impact of changing PEGylation of the nanoparticles. We also investigated how the changing PEG length on the nanoparticle surface impacts further strengthening the stealth properties. Lastly, we determined which cytokines change upon blood incubation with nanoparticles in vitro to understand the extent to which inflammation may occur and the crosstalk between the complement and immune responses. Increasing PEGylation reduced the generation of complement-mediated anaphylatoxin C5a in vitro, with 5000 Da PEG more effectively reducing levels of C5a generated compared to 3400 Da PEG. The insights gathered regarding the impact of PEG density and PEG chain length would be critical in developing stealth nanoparticles that do not lead to infusion reactions upon intravenous administration.
  • Item
    Finding the sweet spot: a library of hydrogels with tunable degradation for tissue model development
    (Royal Society of Chemistry, 2022-03-07) Pandala, Narendra; LaScola, Michael A.; Hinton, Zachary; Korley, LaShanda T.J.; Lavik, Erin
    In vitro models are valuable tools for applications including understanding cellular mechanisms and drug screening. Hydrogel biomaterials facilitate in vitro models by mimicking the extracellular matrix and in vivo microenvironment. However, it can be challenging for cells to form tissues in hydrogels that do not degrade. In contrast, if hydrogels degrade too much or too quickly, tissue models may be difficult to assess in a high throughput manner. In this paper, we present a poly(allylamine) (PAA) based synthetic hydrogel system which can be tuned to control the mechanical and chemical cues provided by the hydrogel scaffold. PAA is a polycation with several biomedical applications, including the delivery of small molecules, nucleic acids, and proteins. Based on PAA and poly(ethylene glycol) (PEG), we developed a synthetic non-degradable system with potential applications for long-term cultures. We then created a second set of gels that combined PAA with poly-L-lysine (PLL) to generate a library of semi-degradable gels with unique degradation kinetics. In this work, we present the hydrogel systems’ synthesis, characterization, and degradation profiles along with cellular data demonstrating that a subset of gels supports the formation of endothelial cell cord-like structures.
  • Item
    Temporal Progression: A case study in Porcine Survivability through Hemostatic Nanoparticles
    (2021-05-26) Kulkarni, Chhaya; Maisha, Nuzhat; Schaub, Leasha J; Glaser, Jacob; Lavik, Erin; Janeja, Vandana
    This paper focuses on the analysis of time series representation of blood loss and cytokines in animals experiencing trauma to understand the temporal progression of factors affecting survivability of the animal. Trauma related grave injuries cause exsanguination and lead to death. 50% of deaths especially in the armed forces are due to trauma injuries. Restricting blood loss usually requires the presence of first responders, which is not feasible in certain cases. Hemostatic nanoparticles have been developed to tackle these kinds of situations to help achieve efficient blood coagulation. Hemostatic nanoparticles were administered into trauma induced porcine animals (pigs) to observe impact on the cytokine and blood loss experienced by them. In this paper we present temporal models to study the impact of the hemostatic nanoparticles and provide snapshots about the trend in cytokines and blood loss in the porcine data to study their progression over time. We utilized Piecewise Aggregate Approximation, Similarity based Merging and clustering to evaluate the impact of the different hemostatic nanoparticles administered. In some cases the fluctuations in the cytokines may be too small. So in addition we highlight situations where temporal modelling that produces a smoothed time series may not be useful as it may remove out the noise and miss the overall fluctuations resulting from the nanoparticles. Our results indicate certain nanop
  • Item
    Computational Design Map for Heterogeneous Experimental Studies
    (2021-05-26) Kulkarni, Chhaya; Nuzhat, Maisha; Lavik, Erin; Janeja, Vandana
    This paper focuses on the discovery of a computational design map of disparate heterogeneous outcomes from bioinformatics experiments in pig (porcine) studies to help identify key variables impacting the experiment outcomes. Specifically we aim to connect discoveries from disparate laboratory experimentation in the area of trauma, blood loss and blood clotting using data science methods in a collaborative ensemble setting. Trauma related grave injuries cause exsanguination and death, constituting up to 50% of deaths especially in the armed forces. Restricting blood loss in such scenarios usually requires the presence of first responders, which is not feasible in certain cases. Moreover, a traumatic event may lead to a cytokine storm, reflected in the cytokine variables. Hemostatic nanoparticles have been developed to tackle these kinds of situations of trauma and blood loss. This paper highlights a collaborative effort of using data science methods in evaluating the outcomes from a lab study to further understand the efficacy of the nanoparticles. An intravenous administration of hemostatic nanoparticles was executed in pigs that had to undergo hemorrhagic shock and blood loss and other immune response variables, cytokine response variables are measured. Thus, through various hemostatic nanoparticles used in the intervention, multiple data outcomes are produced and it becomes critical to understand which nanoparticles are critical and what variables are key to study further variations in the lab. We propose a collaborative data mining framework which combines the results from multiple data mining methods to discover impactful features. We used frequent patterns observed in the data from these experiments. We further validate the connections between these frequent rules by comparing the results with decision trees and feature ranking. Both the frequent patterns and the decision trees help us identify the critical variables that stand out in the lab studies and need further validation and follow up in future studies. The outcomes from the data mining methods help produce a computational design map of the experimental results. Our preliminary results from such a computational design map provided insights in determining which features can help in designing the most effective hemostatic nanoparticles.
  • Item
    Getting to the Core of It All: Nanocapsules to Mitigate Infusion Reactions Can Promote Hemostasis and Be a Platform for Intravenous Therapies
    (ACS Publications, 2021-10-29) Maisha, Nuzhat; Rubenstein, Michael; Bieberich, Charles; Lavik, Erin
    One of the significant challenges to translation of intravenously administered nanomaterials has been complement-mediated infusion reactions which can be lethal. Slow infusions can reduce infusion reactions, but slow infusions are not always possible in applications like controlling bleeding following trauma. Thus, avoiding complement activation and infusion responses is essential to manage bleeding. We identified nanocapsules based on polyurethane as candidates that did not activate C5a and explored their PEGylation and functionalization with the GRGDS peptide to create a new class of hemostatic nanomaterials. Using the clinically relevant rotational thromboelastography (ROTEM), we determined that nanocapsules promote faster clotting than controls and maintain the maximum clot firmness, which is critical for reducing bleeding. Excitingly, these polyurethane-based nanocapsules did not activate complement or the major pro-inflammatory cytokines. This work provides critical evidence for the role of modulating the core material in developing safer nanomedicines for intravenous applications.
  • Item
    Screen Printing Tissue Models Using Chemically Cross-Linked Hydrogel Systems: A Simple Approach To Efficiently Make Highly Tunable Matrices
    (ACS Publications, 2021-10-22) Pandala, Narendra; LaScola, Michael A.; Tang, Yanchun; Bieberich, Maria; Korley, LaShanda T.J.; Lavik, Erin
    In vitro models provide a good starting point for drug screening and understanding various cellular mechanisms corresponding to different conditions. 3D cultures have drawn significant interest to mimic the in vivo microenvironment better and overcome the limitations of the 2D monolayered cultures. We previously reported a technique based on the screen printing process to pattern live mammalian cells using gelatin as the bioink. Even though gelatin is an inexpensive scaffolding material with various tissue engineering applications, it might not be the ideal hydrogel material to provide various mechanical and chemical cues to the cells. In this paper, we discuss the synthesis and characterization of two synthetic chemically cross-linked hydrogel systems based on poly(ethylene glycol) (PEG) and poly-l-lysine (PLL) to be used as the bioink in the screen printing process. These hydrogels are suitable as the bioinks for the screen printing process and serve as the barebone materials that can be tuned mechanically and augmented chemically to create a suitable in vitro microenvironment for the cells. This paper presents the synthesis, mechanical testing, and characterization of the hydrogel systems and their applications in the screen printing process.