Complete genome sequence of the Streptomyces bacteriophage Amabiko

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dc.contributor.authorMilhaven, Mark
dc.contributor.authorBakry, Heba A.
dc.contributor.authorBatra, Anuvi
dc.contributor.authorBermingham, Amanda M.
dc.contributor.authorGrama, Gloria
dc.contributor.authorKebe, Jacob
dc.contributor.authorMartinez, Shawn S.
dc.contributor.authorMudunuri, Rishika V.
dc.contributor.authorNelson, Megan R.
dc.contributor.authorNguyen, Evie T.
dc.contributor.authorPeterson, Mia M.
dc.contributor.authorPruitt, Alexis
dc.contributor.authorTran, Kristan
dc.contributor.authorBrar, Akarshi
dc.contributor.authorCerna, Gabriella
dc.contributor.authorChaffee, Elaine
dc.contributor.authorCaruso, Steven
dc.contributor.authorPfeifer, Susanne P.
dc.date.accessioned2024-05-13T19:11:08Z
dc.date.available2024-05-13T19:11:08Z
dc.date.issued2024-04-23
dc.description.abstractAmabiko is a lytic subcluster BE2 bacteriophage that infects Streptomyces scabiei—a bacterium causing common scab in potatoes. Its 131,414 bp genome has a GC content of 49.5% and contains 245 putative protein-coding genes, 45 tRNAs, and one tmRNA. Amabiko is closely related to Streptomyces bacteriophage MindFlayer (gene content similarity: 86.5%).
dc.description.sponsorshipThis work was supported by a National Science Foundation CAREER grant to S.P.P. (DEB-2045343), the Howard Hughes Medical Institute SEA-PHAGES program, and the School of Life Sciences, Arizona State University. Bacteriophage isolation was performed at the University of Maryland, Baltimore County, MD; library preparation, sequencing, and de novo assembly were performed at the North Carolina State Genomic Sciences Laboratory, Raleigh, NC; genome annotations and comparative analyses were performed at Arizona State University, Tempe, AZ. We are grateful to Suhail Ghafoor for information technology support, as well as Billy Biederman, Graham Hatfull, Deborah Jacobs-Sera, and Vic Sivanathan for training and continued support in the SEA-PHAGES program.
dc.description.urihttps://journals.asm.org/doi/full/10.1128/mra.00182-24
dc.format.extent4 pages
dc.genrejournal articles
dc.identifierdoi:10.13016/m2lkvt-3yaa
dc.identifier.citationMilhaven, Mark, Heba A. Bakry, Anuvi Batra, Amanda M. Bermingham, Gloria Grama, Jacob Kebe, Shawn S. Martinez, et al. “Complete Genome Sequence of the Streptomyces Bacteriophage Amabiko.” Microbiology Resource Announcements 0, no. 0 (April 23, 2024): e00182-24. https://doi.org/10.1128/mra.00182-24.
dc.identifier.urihttps://doi.org/10.1128/mra.00182-24
dc.identifier.urihttp://hdl.handle.net/11603/33930
dc.language.isoen_US
dc.publisherAmerican Society for Microbiology
dc.relation.isAvailableAtThe University of Maryland, Baltimore County (UMBC)
dc.relation.ispartofUMBC Faculty Collection
dc.relation.ispartofUMBC Biological Sciences Department
dc.relation.ispartofUMBC Student Collection
dc.rightsCC BY 4.0 DEED Attribution 4.0 International
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.titleComplete genome sequence of the Streptomyces bacteriophage Amabiko
dc.typeText
dcterms.creatorhttps://orcid.org/0000-0001-9166-9137

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