Using Neural Networks to Sanitize Compton Camera Simulated Data through the BRIDE Pipeline for Improving Gamma Imaging in Proton Therapy on the ada Cluster

dc.contributor.authorChen, Michael O.
dc.contributor.authorHodge, Julian
dc.contributor.authorJin, Peter L.
dc.contributor.authorProtz, Ella
dc.contributor.authorWong, Elizabeth
dc.contributor.authorObe, Ruth
dc.contributor.authorShakeri, Ehsan
dc.contributor.authorCham, Mostafa
dc.contributor.authorGobbert, Matthias
dc.contributor.authorBarajas, Carlos A.
dc.contributor.authorJiang, Zhuoran
dc.contributor.authorSharma, Vijay R.
dc.contributor.authorRen, Lei
dc.contributor.authorMossahebi, Sina
dc.contributor.authorPeterson, Stephen W.
dc.contributor.authorPolf, Jerimy C.
dc.date.accessioned2025-01-31T18:24:23Z
dc.date.available2025-01-31T18:24:23Z
dc.date.issued2024
dc.description.abstractPrecision medicine in cancer treatment increasingly relies on advanced radiotherapies, such as proton beam radiotherapy, to enhance e?cacy of the treatment. When the proton beam in this treatment interacts with patient matter, the excited nuclei may emit prompt gamma ray interactions that can be captured by a Compton camera. The image reconstruction from this captured data faces the issue of mischaracterizing the sequences of incoming scattering events, leading to excessive background noise. To address this problem, several machine learning models such as Feedfoward Neural Networks (FNN) and Recurrent Neural Networks (RNN) were developed in PyTorch to properly characterize the scattering sequences on simulated datasets, including newly-created patient medium data, which were generated by using a pipeline comprised of the GEANT4 and Monte-Carlo Detector E?ects (MCDE) softwares. These models were implemented using the novel 態ig-data REU Integrated Development and Experimentation� (BRIDE) platform, a modular pipeline that streamlines preprocessing, feature engineering, and model development and evaluation on parallelized GPU processors. Hyperparameter studies were done on the novel patient data as well as on water phantom datasets used during previous research. Patient data was more di?cult than water phantom data to classify for both FNN and RNN models. FNN models had higher accuracy on patient medium data but lower accuracy on water phantom data when compared to RNN models. Previous results on several di?erent datasets were reproduced on BRIDE and multiple new models achieved greater performance than in previous research.
dc.description.sponsorshipThis work is supported by the grant 揜EU Site: Online Interdisciplinary Big Data Analytics in Science and Engineering� from the National Science Foundation (grant no. OAC�48755). Undergraduate assistant co-author Obe acknowledges support from an REU Supplement. Co-authors Sharma and Ren acknowledge support from the NIH. The hardware used in the computational studies is part of the UMBC High Performance Computing Facility (HPCF). The facility is supported by the U.S. National Science Foundation through the MRI program (grant nos. CNS�21258, CNS�28778, OAC�26023, and CNS�20079) and the SCREMS program (grant no. DMS� 0821311), with additional substantial support from the University of Maryland, Baltimore County (UMBC). See hpcf.umbc.edu for more information on HPCF and the projects using its resources.
dc.description.urihttps://hpcf-files.umbc.edu/research/papers/BigDataREU2024Team2.pdf
dc.format.extent57 pages
dc.genretechnical reports
dc.identifierdoi:10.13016/m2rgus-ciiy
dc.identifier.urihttp://hdl.handle.net/11603/37597
dc.language.isoen_US
dc.relation.isAvailableAtThe University of Maryland, Baltimore County (UMBC)
dc.relation.ispartofUMBC Mathematics and Statistics Department
dc.relation.ispartofUMBC Faculty Collection
dc.relation.ispartofUMBC Student Collection
dc.rightsThis item is likely protected under Title 17 of the U.S. Copyright Law. Unless on a Creative Commons license, for uses protected by Copyright Law, contact the copyright holder or the author.
dc.subjectUMBC High Performance Computing Facility (HPCF)
dc.titleUsing Neural Networks to Sanitize Compton Camera Simulated Data through the BRIDE Pipeline for Improving Gamma Imaging in Proton Therapy on the ada Cluster
dc.typeText
dcterms.creatorhttps://orcid.org/0000-0003-1745-2292

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